Semmelweisstr. 14
04103 Leipzig

Tel: +49(0)341/97-12012
Fax: +49(0)341/97-12009
E-Mail: claire.chalopin@iccas.de


Background & Position

I received my PhD degree in 2000 in Medical Imaging from the University of Lyon, France. My dissertation topic was on the automatic labelling of the coronary arteries in X-ray angiography and based on a 3D topological model. Then, I worked as Research Follow on the segmentation of focal brain lesions at the Max Planck Institute for Human Cognitive and Brain Sciences in Leipzig, Germany.

In 2005 I joined ICCAS as researcher. My research focuses on the development of segmentation and registration tools for the computer assisted surgery.


Research Areas

My research areas focus on the development of tools for the processing and analysis of intraoperative ultrasound (US) imaging in neurosurgery. I implemented a semi-automatic segmentation method for the extraction of blood vessels for the evaluation of 3D intraoperative US angiography with the application of an US contrast agent. Currently, I am working on a national project in close collaboration with the neurosurgery department of the university hospital of Leipzig for the evaluation of intraoperative 3D enhanced US imaging for tumor resection.


Publications

2015

S, Kropf; C, Chalopin; K, Denecke

Template and Model Driven Development of Standardized Electronic Health Records (Konferenzbeitrag)

IN, Sharar; A, Georgiou; de P, Mazzoncini Azevedo Marques (Hrsg.): Studies in Health Technology and Informatics, S. 30–4, IOS Press, Sao Paulo, Brazil, 2015, ISBN: 978-1-61499-563-0.

(BibTeX)

P, Rathmann; D, Lindner; D, Halama; J, Meixensberger; C, Chalopin

Dynamische Infrarot-Thermographie (DIRT) zur Darstellung der Kopfhautdurchblutung bei neurochirurgischen Eingriffen (Konferenzbeitrag)

Tagungsband der 14. Jahrestagung der Deutschen Gesellschaft für Computer und Roboterassistierte Chirurgie (CURAC), S. 17–19, Bremen, 2015.

(BibTeX)

2014

E, Ilunga Mbuyamba; D, Lindner; F, Arlt; A, Muens; J, Meixensberger; C, Chalopin

Vascular structure tracking in intraoperative 3D ultrasound data during brain tumor resection. (Konferenzbeitrag)

48th Annual Conference of the German Society for Biomedical Engineering (DGBMT), Hannover, 2014.

(BibTeX)

M, Unger; C, Chalopin; T, Neumuth

Vision-based online recognition of surgical activities. (Artikel)

Int J Comput Assist Radiol Surg,, 2014, ISSN: 1861-6410.

(Links | BibTeX)

E, Ilunga Mbuyamba; D, Lindner; F, Arlt; A, Muens; J, Meixensberger; C, Chalopin

Vascular structure tracking in intraoperative 3D ultrasound data during brain tumor resection. (Artikel)

Biomed Tech, 59(1) , S. 457, 2014.

(BibTeX)

2013

C, Chalopin; S, Oeltze; B, Preim; A, Müns; J, Meixensberger; D, Lindner

Evaluation of ultrasound perfusion for brain tumor resection surgery. (Konferenzbeitrag)

12th Leipzig Research Festival for Life Sciences. Universität Leipzig 2013, 2013.

(BibTeX)

N, Knoop; C, Chalopin; F, Arlt; J, Meixensberger; D, Lindner

Intraoperative contrast enhanced ultrasound perfusion analysis in brain tumors. (Konferenzbeitrag)

12th Leipzig Research Festival for Life Sciences. Universität Leipzig 2013, 2013.

(BibTeX)

C, Chalopin; K, Krissian; J, Meixensberger; A, Müns; F, Arlt; D, Lindner

Evaluation of a semi-automatic segmentation algorithm in 3D intraoperative ultrasound brain angiography. (Konferenzbeitrag)

S. 293–302, Biomed Tech, 2013.

(BibTeX)

M, Unger; C, Chalopin; T, Neumuth

Automatic gesture recognition based on thermography. (Konferenzbeitrag)

Biomedizinische Technik, S. 203–204, 2013.

(BibTeX)

F, Arlt; C, Chalopin; A, Müns; J, Meixensberger; D, Lindner

Intraoperative resection control with contrast enhanced 3D-ultrasound – first results in patients with glioblastoma. (Konferenzbeitrag)

64. Jahrestagung der Deutschen Gesellschaft für Neurochirurgie (DGNC), 2013.

(Links | BibTeX)

C, Chalopin; S, Oeltze; B, Preim; A, Müns; J, Meixensberger; D, Lindner

Method for the evaluation of US perfusion for brain tumor surgery. (Konferenzbeitrag)

12. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboter Assistierte Chirurgie, Innsbruck, S. 198–202, 2013.

(Links | BibTeX)

A, Müns; C, Mühl; R, Haase; H, Möckel; C, Chalopin; J, Meixensberger; D, Lindner

A neurosurgical phantom-based training system with ultrasound simulation. (Artikel)

Acta Neurochir (Wien), 2013, 156 (6), S. 1237–43, 2013, ISSN: 0001-6268.

(Links | BibTeX)

A, Müns; S, Arnold; A, Schmitgen; F, Arlt; C, Chalopin; J, Meixensberger; D, Lindner

Improvement of neuronavigation based on ultrasound by means of the digital video interface. (Artikel)

Biomed Tech, 57 (S1) , S. 448–451, 2013.

(BibTeX)

2012

K, Krissian; F, Santana; D, Santana-Cedrés; C, Falcón-Torres; S, Arencibia; S, Illera; A, Trujillo; C, Chalopin; L, Alvarez León

AMILab Software: Medical Image Analysis, Processing and Visualization. (Artikel)

MMVR NextMed Medicine Meets Virtual Reality, 173 , S. 233–237, 2012, ISSN: 978-1-61499-021-5.

(Links | BibTeX)

C, Chalopin; R, Lindenberg; F, Arlt; A, Müns; J, Meixensberger; D, Lindner

Brain tumor enhancement revealed by 3D intraoperative ultrasound imaging in a navigation system. (Artikel)

Biomed Tech, 57 (S1) , S. 468–471, 2012.

(BibTeX)

2011

C, Chalopin; K, Krissian; A, Müns; F, Arlt; J, Meixensberger

Phantom-based evaluation of a semi-automatic segmentation algorithm for cerebral vascular structures in 3D ultrasound angiography (3D USA). (Artikel)

10. Jahrestagung der Gesellschaft für Computer- und Roboterassistierte Chirurgie e.V.,, S. 75–79,, 2011, (ISBN: 978-3-940961-59-4, ISBN: 978-3-940961-59-4,).

(BibTeX)

A, Müns; J, Meixensberger; S, Arnold; A, Schmitgen; F, Arlt; C, Chalopin; D, Lindner

Integration of a 3D ultrasound probe into neuronavigation. (Artikel)

Acta Neurochirurgica,, 153, (7,), S. 1529–1533,, 2011, (ISSN: 0001-6268, online published, ISSN: 0001-6268, online published,).

(Links | BibTeX)

DR, Merk; M, Karar; C, Chalopin; D, Holzhey; V, Falk; FW, Mohr; O, Burgert

Image-guided transapical aortic valve implantation: Sensorless tracking of stenotic valve landmarks in live fluoroscopic images. (Artikel)

Journal of Innovations: Technology and Techniques in Cardiothoracic and Vascular Surgery, 6 (4), S. 231–236, 2011, ISSN: 1556-9845.

(Links | BibTeX)

M, Karar; D, Merk; C, Chalopin; T, Walther; V, Falk; O, Burgert

Aortic valve prosthesis tracking for transapical aortic valve implantation. (Artikel)

International Journal of Computer Assisted Radiology and Surgery,, 6, (5,), S. 583–590,, 2011, (ISSN: 1861-6410, ISSN: 1861-6410,).

(BibTeX)

2010

C, Chalopin; P, Kontso; K, Krissian; R, Mayoral; D, Lindner

Modeling of the cerebral vascular structures based on intraoperative ultrasound imaging. (Konferenzbeitrag)

International Journal of Computer Assisted Radiology and Surgery 5 Supplement 1, S. S254, 2010.

(BibTeX)

C, Chalopin; P, Kongtso; K, Krissian; R, Mayoral; D, Lindner

Modeling of the cerebral vascular structures based on intraoperative ultrasound imaging. (Artikel)

5, (Supplement 1,), S. 254–256,, 2010, (ISSN 1861-6410, ISSN 1861-6410,).

(BibTeX)

C, Chalopin; D, Lindner; A, Müns; F, Arlt; J, Meixensberger

Pipeline for the evaluation of navigated 3D intraoperative enhanced ultrasound imaging in neurosurgery for brain tumor resection. (Artikel)

9. Jahrestagung der Gesellschaft für Computer- und Roboterassistierte Chirurgie e.V. (CURAC),, S. 35–38,, 2010, (ISBN 978-3-86247-078-5, ISBN 978-3-86247-078-5,).

(BibTeX)

D, Lindner; C, Chalopin; J, Meixensberger

Workflowanalytik in der Neurochirurgie - wann, wie und warum. (Artikel)

9. Jahrestagung der Gesellschaft für Computer- und Roboterassistierte Chirurgie e.V. (CURAC), S. 251, 2010, (ISBN 978-3-86247-078-5).

(BibTeX)

C, Chalopin; D, Lindner; A, Müns; F, Arlt; J, Meixensberger

Pipeline for the evaluation of intraoperative 3D enhanced ultrasound imaging for brain tumor resection. (Artikel)

9th Leipzig Research Festival for Life Sciences,, 2010, (ISBN: 978-3-9810760-6-6, ISBN: 978-3-9810760-6-6,).

(BibTeX)

2009

M, Karar; C, Chalopin; DR, Merk; S, Jacobs; T, Walther; V, Falk; O, Burgert

Localization and tracking of aortic valve prosthesis in 2D fluoroscopic image sequences. (Konferenzbeitrag)

MI, Miga; KH, Wong (Hrsg.): Medical Imaging: Visualization, Image-guided Procedures and Modeling, S. 72/611–72/6118, 2009.

(BibTeX)

C, Chalopin; D, Lindner; R, Mayoral

Segmentation of cerebral blood vessels in 3D intraoperative ultrasound angiographic data (3D-iUSA). (Konferenzbeitrag)

Proceedings of the 23rd International Congress and Exhibition of Computer Assisted Radiology and Surgery (CARS 2009), S. 109–111, 2009.

(BibTeX)

2008

C, Chalopin; D, Lindner; R, Mayoral

Image processing tools for extracting cerebral arteries in 3D intraoperative ultrasound angiography (3D-iUSA). (Konferenzbeitrag)

Tagungsband der 7. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie e.V. (CURAC), S. 185–187, Leipzig, 2008.

(BibTeX)

D, Lindner; C, Chalopin; D, Fritzsch; C, Trantakis; J, Meixensberger

Intraoperativer kontrastverstärkter Ultraschall für niedriggradige Gliome. (Konferenzbeitrag)

Tagungsband der 7. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie e.V. (CURAC), S. 77–79, Leipzig, 2008.

(BibTeX)

D, Lindner; C, Renner; C, Trantakis; C, Chalopin; D, Fritzsch; R, Haase; J, Meixensberger

Intraoperative contrast enhanced ultrasound angiography (tUSA) - a new method in Neurosurgery. (Artikel)

Int J CARS, 3 (1), S. 72–73, 2008.

(BibTeX)

2006

O, Burgert; W, Korb; M, Gessat; S, Bohn; C, Chalopin; R, Mayoral; HU, Lemke; G, Strauss

Real Time Issues for usage of Vision and Image Data in the Future Operating Room. (Konferenzbeitrag)

2006 IEEE International Conference on Multisensor Fusion and Integration for Intelligent Systems, S. 285–290, 2006.

(BibTeX)

C, Chalopin; S, Jacobs; O, Burgert

A semi-automatic segmentation tool for vessel centreline extraction from static 2D X-ray angiograms. (Konferenzbeitrag)

Proceedings of Curac, Hannover, Germany, S. 134–135, 2006.

(BibTeX)